3-mers AGG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.610184

Neutral set average density: 0.0021403

Different set average density: 0.00227364

Presence of motif

           motif_present
gene_set    absent present
  different    886     108
  neutral     1760     193

Fisher's exact test: p=0.403677

Binomial GLM: p=0.404933

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4796  -0.4796  -0.4562  -0.4562   2.1515  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.21038    0.07582 -29.154   <2e-16 ***
differentTRUE  0.10579    0.12703   0.833    0.405    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1943.6  on 2946  degrees of freedom
Residual deviance: 1942.9  on 2945  degrees of freedom
AIC: 1946.9

Number of Fisher Scoring iterations: 4