3-mers AGU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=7.02726e-05

Neutral set average density: 0.0118894

Different set average density: 0.00965795

Presence of motif

           motif_present
gene_set    absent present
  different    600     394
  neutral     1087     866

Fisher's exact test: p=0.0146805

Binomial GLM: p=0.0147211

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.083  -1.083  -1.005   1.275   1.360  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.22729    0.04555  -4.990 6.04e-07 ***
differentTRUE -0.19329    0.07924  -2.439   0.0147 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4023.3  on 2946  degrees of freedom
Residual deviance: 4017.3  on 2945  degrees of freedom
AIC: 4021.3

Number of Fisher Scoring iterations: 4