3-mers AGU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0591671

Neutral set average density: 0.008766

Different set average density: 0.00778672

Presence of motif

           motif_present
gene_set    absent present
  different    692     302
  neutral     1266     687

Fisher's exact test: p=0.00935152

Binomial GLM: p=0.00922044

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9311  -0.9311  -0.8511   1.4455   1.5436  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.61128    0.04739 -12.900  < 2e-16 ***
differentTRUE -0.21788    0.08368  -2.604  0.00922 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3760.8  on 2946  degrees of freedom
Residual deviance: 3753.9  on 2945  degrees of freedom
AIC: 3757.9

Number of Fisher Scoring iterations: 4