3-mers AUA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.838278

Neutral set average density: 0.0216692

Different set average density: 0.0214889

Presence of motif

           motif_present
gene_set    absent present
  different    366     628
  neutral      741    1212

Fisher's exact test: p=0.573358

Binomial GLM: p=0.552567

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4136  -1.3922   0.9583   0.9768   0.9768  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.49203    0.04663  10.551   <2e-16 ***
differentTRUE  0.04788    0.08062   0.594    0.553    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3901.2  on 2946  degrees of freedom
Residual deviance: 3900.8  on 2945  degrees of freedom
AIC: 3904.8

Number of Fisher Scoring iterations: 4