3-mers AUA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.784523

Neutral set average density: 0.0151715

Different set average density: 0.0152495

Presence of motif

           motif_present
gene_set    absent present
  different      4     990
  neutral       16    1937

Fisher's exact test: p=0.239921

Binomial GLM: p=0.201917

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.3213   0.0898   0.1283   0.1283   0.1283  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     4.7963     0.2510  19.106   <2e-16 ***
differentTRUE   0.7151     0.5604   1.276    0.202    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 239.58  on 2946  degrees of freedom
Residual deviance: 237.72  on 2945  degrees of freedom
AIC: 241.72

Number of Fisher Scoring iterations: 8