3-mers AUA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=5.08525e-06

Neutral set average density: 0.025489

Different set average density: 0.0211469

Presence of motif

           motif_present
gene_set    absent present
  different    388     606
  neutral      599    1354

Fisher's exact test: p=6.68633e-06

Binomial GLM: p=5.67122e-06

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5374  -1.3717   0.8559   0.8559   0.9948  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.81556    0.04907  16.620  < 2e-16 ***
differentTRUE -0.36968    0.08146  -4.538 5.67e-06 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3758.1  on 2946  degrees of freedom
Residual deviance: 3737.6  on 2945  degrees of freedom
AIC: 3741.6

Number of Fisher Scoring iterations: 4