3-mers AUC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.206801

Neutral set average density: 0.01617

Different set average density: 0.0170624

Presence of motif

           motif_present
gene_set    absent present
  different    420     574
  neutral      852    1101

Fisher's exact test: p=0.479288

Binomial GLM: p=0.477242

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.313  -1.288   1.048   1.071   1.071  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.25639    0.04563   5.619 1.92e-08 ***
differentTRUE  0.05599    0.07877   0.711    0.477    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4030.1  on 2946  degrees of freedom
Residual deviance: 4029.6  on 2945  degrees of freedom
AIC: 4033.6

Number of Fisher Scoring iterations: 4