3-mers AUC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=2.12045e-09

Neutral set average density: 0.017703

Different set average density: 0.0192958

Presence of motif

           motif_present
gene_set    absent present
  different      1     993
  neutral        1    1952

Fisher's exact test: p=1

Binomial GLM: p=0.632836

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.8928   0.0320   0.0320   0.0449   0.0449  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     7.5766     1.0002   7.575  3.6e-14 ***
differentTRUE  -0.6759     1.4147  -0.478    0.633    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 33.180  on 2946  degrees of freedom
Residual deviance: 32.956  on 2945  degrees of freedom
AIC: 36.956

Number of Fisher Scoring iterations: 10