3-mers AUC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000117807

Neutral set average density: 0.0171633

Different set average density: 0.0202012

Presence of motif

           motif_present
gene_set    absent present
  different    371     623
  neutral      857    1096

Fisher's exact test: p=0.000675481

Binomial GLM: p=0.00064992

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4040  -1.2835   0.9666   1.0749   1.0749  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.24598    0.04560   5.395 6.87e-08 ***
differentTRUE  0.27236    0.07987   3.410  0.00065 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4003.2  on 2946  degrees of freedom
Residual deviance: 3991.5  on 2945  degrees of freedom
AIC: 3995.5

Number of Fisher Scoring iterations: 4