3-mers AUG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.521123

Neutral set average density: 0.00683052

Different set average density: 0.00653924

Presence of motif

           motif_present
gene_set    absent present
  different    711     283
  neutral     1423     530

Fisher's exact test: p=0.458761

Binomial GLM: p=0.444006

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8186  -0.7957  -0.7957   1.5851   1.6151  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.98765    0.05089 -19.408   <2e-16 ***
differentTRUE  0.06642    0.08677   0.765    0.444    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3471.6  on 2946  degrees of freedom
Residual deviance: 3471.1  on 2945  degrees of freedom
AIC: 3475.1

Number of Fisher Scoring iterations: 4