3-mers AUG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000211711

Neutral set average density: 0.0176518

Different set average density: 0.0187586

Presence of motif

           motif_present
gene_set    absent present
  different      0     994
  neutral        3    1950

Fisher's exact test: p=0.555377

Binomial GLM: p=0.99459

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5996   0.0000   0.0554   0.0554   0.0554  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)      6.4770     0.5778  11.210   <2e-16 ***
differentTRUE   17.0891  2520.3823   0.007    0.995    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 47.337  on 2946  degrees of freedom
Residual deviance: 44.866  on 2945  degrees of freedom
AIC: 48.866

Number of Fisher Scoring iterations: 22