3-mers AUG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.198111

Neutral set average density: 0.0133845

Different set average density: 0.0125956

Presence of motif

           motif_present
gene_set    absent present
  different    522     472
  neutral     1006     947

Fisher's exact test: p=0.612428

Binomial GLM: p=0.605844

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.152  -1.152  -1.135   1.203   1.220  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)   -0.06044    0.04528  -1.335    0.182
differentTRUE -0.04025    0.07800  -0.516    0.606

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4081.4  on 2946  degrees of freedom
Residual deviance: 4081.1  on 2945  degrees of freedom
AIC: 4085.1

Number of Fisher Scoring iterations: 3