3-mers AUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=5.00299e-05

Neutral set average density: 0.0466871

Different set average density: 0.0513078

Presence of motif

           motif_present
gene_set    absent present
  different     72     922
  neutral      187    1766

Fisher's exact test: p=0.0387934

Binomial GLM: p=0.0351161

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.2913   0.3878   0.4487   0.4487   0.4487  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     2.2454     0.0769  29.198   <2e-16 ***
differentTRUE   0.3045     0.1445   2.107   0.0351 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1754.2  on 2946  degrees of freedom
Residual deviance: 1749.6  on 2945  degrees of freedom
AIC: 1753.6

Number of Fisher Scoring iterations: 5