3-mers CAA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0360239

Neutral set average density: 0.0243113

Different set average density: 0.0226761

Presence of motif

           motif_present
gene_set    absent present
  different    295     699
  neutral      534    1419

Fisher's exact test: p=0.193653

Binomial GLM: p=0.182591

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.6104  -1.5587   0.7993   0.7993   0.8391  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.97731    0.05077  19.251   <2e-16 ***
differentTRUE -0.11464    0.08601  -1.333    0.183    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3502.1  on 2946  degrees of freedom
Residual deviance: 3500.3  on 2945  degrees of freedom
AIC: 3504.3

Number of Fisher Scoring iterations: 4