3-mers CAA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.787347

Neutral set average density: 0.0184229

Different set average density: 0.0186318

Presence of motif

           motif_present
gene_set    absent present
  different    399     595
  neutral      793    1160

Fisher's exact test: p=0.811897

Binomial GLM: p=0.808541

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.351  -1.343   1.013   1.021   1.021  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.38035    0.04608   8.255   <2e-16 ***
differentTRUE  0.01925    0.07944   0.242    0.809    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3977.2  on 2946  degrees of freedom
Residual deviance: 3977.1  on 2945  degrees of freedom
AIC: 3981.1

Number of Fisher Scoring iterations: 4