3-mers CAC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.556394

Neutral set average density: 0.0102202

Different set average density: 0.0106036

Presence of motif

           motif_present
gene_set    absent present
  different    622     372
  neutral     1247     706

Fisher's exact test: p=0.517554

Binomial GLM: p=0.496888

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9683  -0.9472  -0.9472   1.4020   1.4265  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.56888    0.04710 -12.078   <2e-16 ***
differentTRUE  0.05483    0.08071   0.679    0.497    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3870.5  on 2946  degrees of freedom
Residual deviance: 3870.0  on 2945  degrees of freedom
AIC: 3874

Number of Fisher Scoring iterations: 4