3-mers CAG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.462283

Neutral set average density: 0.0188223

Different set average density: 0.0192354

Presence of motif

           motif_present
gene_set    absent present
  different    237     757
  neutral      537    1416

Fisher's exact test: p=0.0336538

Binomial GLM: p=0.0332582

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.6933  -1.6069   0.7381   0.8019   0.8019  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.96959    0.05068  19.132   <2e-16 ***
differentTRUE  0.19171    0.09005   2.129   0.0333 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3393.8  on 2946  degrees of freedom
Residual deviance: 3389.2  on 2945  degrees of freedom
AIC: 3393.2

Number of Fisher Scoring iterations: 4