3-mers CAG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0575892

Neutral set average density: 0.00444444

Different set average density: 0.00517103

Presence of motif

           motif_present
gene_set    absent present
  different    764     230
  neutral     1566     387

Fisher's exact test: p=0.0394471

Binomial GLM: p=0.0362133

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7255  -0.7255  -0.6646  -0.6646   1.7993  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.39786    0.05677 -24.624   <2e-16 ***
differentTRUE  0.19737    0.09423   2.095   0.0362 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3024.3  on 2946  degrees of freedom
Residual deviance: 3020.0  on 2945  degrees of freedom
AIC: 3024

Number of Fisher Scoring iterations: 4