3-mers CAU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000105962

Neutral set average density: 0.0183308

Different set average density: 0.0214688

Presence of motif

           motif_present
gene_set    absent present
  different    342     652
  neutral      820    1133

Fisher's exact test: p=6.69274e-05

Binomial GLM: p=7.04987e-05

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4608  -1.3174   0.9184   1.0435   1.0435  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.32332    0.04585   7.052 1.77e-12 ***
differentTRUE  0.32191    0.08099   3.975 7.05e-05 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3952.7  on 2946  degrees of freedom
Residual deviance: 3936.7  on 2945  degrees of freedom
AIC: 3940.7

Number of Fisher Scoring iterations: 4