3-mers CCA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.185004

Neutral set average density: 0.0123502

Different set average density: 0.0115493

Presence of motif

           motif_present
gene_set    absent present
  different    551     443
  neutral     1084     869

Fisher's exact test: p=1

Binomial GLM: p=0.970439

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.086  -1.085  -1.085   1.273   1.273  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.221070   0.045533  -4.855  1.2e-06 ***
differentTRUE  0.002905   0.078393   0.037     0.97    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4049.9  on 2946  degrees of freedom
Residual deviance: 4049.9  on 2945  degrees of freedom
AIC: 4053.9

Number of Fisher Scoring iterations: 3