3-mers CCA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000690176

Neutral set average density: 0.0168674

Different set average density: 0.0156378

Presence of motif

           motif_present
gene_set    absent present
  different      2     992
  neutral        5    1948

Fisher's exact test: p=1

Binomial GLM: p=0.773131

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5238   0.0635   0.0716   0.0716   0.0716  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.9651     0.4478  13.321   <2e-16 ***
differentTRUE   0.2415     0.8376   0.288    0.773    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 98.580  on 2946  degrees of freedom
Residual deviance: 98.494  on 2945  degrees of freedom
AIC: 102.49

Number of Fisher Scoring iterations: 9