3-mers CCG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.525148

Neutral set average density: 0.00464926

Different set average density: 0.00490946

Presence of motif

           motif_present
gene_set    absent present
  different    793     201
  neutral     1565     388

Fisher's exact test: p=0.845516

Binomial GLM: p=0.820043

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6722  -0.6722  -0.6655  -0.6655   1.7978  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.39464    0.05671 -24.591   <2e-16 ***
differentTRUE  0.02212    0.09722   0.227     0.82    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2948.3  on 2946  degrees of freedom
Residual deviance: 2948.2  on 2945  degrees of freedom
AIC: 2952.2

Number of Fisher Scoring iterations: 4