3-mers CCG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.815398

Neutral set average density: 0.00904147

Different set average density: 0.00898994

Presence of motif

           motif_present
gene_set    absent present
  different     24     970
  neutral       48    1905

Fisher's exact test: p=1

Binomial GLM: p=0.942654

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.7290   0.2211   0.2231   0.2231   0.2231  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    3.68104    0.14614  25.188   <2e-16 ***
differentTRUE  0.01821    0.25309   0.072    0.943    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 676.74  on 2946  degrees of freedom
Residual deviance: 676.73  on 2945  degrees of freedom
AIC: 680.73

Number of Fisher Scoring iterations: 6