3-mers CGA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.138149

Neutral set average density: 0.00643113

Different set average density: 0.00714286

Presence of motif

           motif_present
gene_set    absent present
  different    710     284
  neutral     1426     527

Fisher's exact test: p=0.360096

Binomial GLM: p=0.361729

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8203  -0.7931  -0.7931   1.5829   1.6186  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.99543    0.05098 -19.526   <2e-16 ***
differentTRUE  0.07914    0.08677   0.912    0.362    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3467.8  on 2946  degrees of freedom
Residual deviance: 3467.0  on 2945  degrees of freedom
AIC: 3471

Number of Fisher Scoring iterations: 4