3-mers CGC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0456912

Neutral set average density: 0.00417819

Different set average density: 0.00498994

Presence of motif

           motif_present
gene_set    absent present
  different    777     217
  neutral     1625     328

Fisher's exact test: p=0.00109299

Binomial GLM: p=0.000896819

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7018  -0.7018  -0.6064  -0.6064   1.8890  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.60025    0.06053 -26.436  < 2e-16 ***
differentTRUE  0.32471    0.09777   3.321 0.000897 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2822.0  on 2946  degrees of freedom
Residual deviance: 2811.1  on 2945  degrees of freedom
AIC: 2815.1

Number of Fisher Scoring iterations: 4