3-mers CGG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.813836

Neutral set average density: 0.00346134

Different set average density: 0.00354125

Presence of motif

           motif_present
gene_set    absent present
  different    838     156
  neutral     1657     296

Fisher's exact test: p=0.705329

Binomial GLM: p=0.701584

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5843  -0.5843  -0.5733  -0.5733   1.9426  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.72240    0.06310 -27.298   <2e-16 ***
differentTRUE  0.04124    0.10763   0.383    0.702    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2525.7  on 2946  degrees of freedom
Residual deviance: 2525.6  on 2945  degrees of freedom
AIC: 2529.6

Number of Fisher Scoring iterations: 3