3-mers CGG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.574758

Neutral set average density: 0.00777061

Different set average density: 0.00765996

Presence of motif

           motif_present
gene_set    absent present
  different     32     962
  neutral       96    1857

Fisher's exact test: p=0.0352445

Binomial GLM: p=0.0339866

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-2.6214   0.2558   0.3175   0.3175   0.3175  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     2.9624     0.1047   28.30   <2e-16 ***
differentTRUE   0.4409     0.2080    2.12    0.034 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1053.3  on 2946  degrees of freedom
Residual deviance: 1048.5  on 2945  degrees of freedom
AIC: 1052.5

Number of Fisher Scoring iterations: 6