3-mers CGG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.889759

Neutral set average density: 0.0027957

Different set average density: 0.00283702

Presence of motif

           motif_present
gene_set    absent present
  different    865     129
  neutral     1700     253

Fisher's exact test: p=1

Binomial GLM: p=0.985711

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5273  -0.5273  -0.5268  -0.5268   2.0217  

Coefficients:
               Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.904994   0.067385 -28.270   <2e-16 ***
differentTRUE  0.002077   0.115969   0.018    0.986    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2273.1  on 2946  degrees of freedom
Residual deviance: 2273.1  on 2945  degrees of freedom
AIC: 2277.1

Number of Fisher Scoring iterations: 4