3-mers CGU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0018818

Neutral set average density: 0.00625704

Different set average density: 0.00768612

Presence of motif

           motif_present
gene_set    absent present
  different    668     326
  neutral     1432     521

Fisher's exact test: p=0.000572252

Binomial GLM: p=0.000529411

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8916  -0.7878  -0.7878   1.4932   1.6257  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.01108    0.05116 -19.762  < 2e-16 ***
differentTRUE  0.29369    0.08475   3.465 0.000529 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3535.3  on 2946  degrees of freedom
Residual deviance: 3523.4  on 2945  degrees of freedom
AIC: 3527.4

Number of Fisher Scoring iterations: 4