3-mers CGU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.085821

Neutral set average density: 0.00632873

Different set average density: 0.00710262

Presence of motif

           motif_present
gene_set    absent present
  different    691     303
  neutral     1421     532

Fisher's exact test: p=0.0693828

Binomial GLM: p=0.064876

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8528  -0.7975  -0.7975   1.5414   1.6127  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.98247    0.05083 -19.330   <2e-16 ***
differentTRUE  0.15807    0.08562   1.846   0.0649 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3513.3  on 2946  degrees of freedom
Residual deviance: 3509.9  on 2945  degrees of freedom
AIC: 3513.9

Number of Fisher Scoring iterations: 4