3-mers CUA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.751301

Neutral set average density: 0.0110599

Different set average density: 0.0112475

Presence of motif

           motif_present
gene_set    absent present
  different    578     416
  neutral     1112     841

Fisher's exact test: p=0.554635

Binomial GLM: p=0.529778

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.061  -1.061  -1.041   1.298   1.320  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.27932    0.04570  -6.112 9.82e-10 ***
differentTRUE -0.04956    0.07888  -0.628     0.53    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4021.6  on 2946  degrees of freedom
Residual deviance: 4021.2  on 2945  degrees of freedom
AIC: 4025.2

Number of Fisher Scoring iterations: 4