3-mers CUA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.000115348

Neutral set average density: 0.00977163

Different set average density: 0.00902012

Presence of motif

           motif_present
gene_set    absent present
  different     11     983
  neutral       36    1917

Fisher's exact test: p=0.161354

Binomial GLM: p=0.135407

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.0013   0.1492   0.1929   0.1929   0.1929  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     3.9750     0.1682  23.629   <2e-16 ***
differentTRUE   0.5177     0.3467   1.493    0.135    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 482.26  on 2946  degrees of freedom
Residual deviance: 479.83  on 2945  degrees of freedom
AIC: 483.83

Number of Fisher Scoring iterations: 7