3-mers CUA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=5.47861e-05

Neutral set average density: 0.0106298

Different set average density: 0.0130785

Presence of motif

           motif_present
gene_set    absent present
  different    512     482
  neutral     1152     801

Fisher's exact test: p=0.000117309

Binomial GLM: p=0.000110783

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.152  -1.027  -1.027   1.335   1.335  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.36339    0.04601  -7.899 2.81e-15 ***
differentTRUE  0.30301    0.07839   3.866 0.000111 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4036.0  on 2946  degrees of freedom
Residual deviance: 4021.1  on 2945  degrees of freedom
AIC: 4025.1

Number of Fisher Scoring iterations: 4