3-mers CUC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0538044

Neutral set average density: 0.0128213

Different set average density: 0.0142254

Presence of motif

           motif_present
gene_set    absent present
  different    527     467
  neutral     1120     833

Fisher's exact test: p=0.0254085

Binomial GLM: p=0.0252836

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.127  -1.055  -1.055   1.305   1.305  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.29605    0.04575  -6.471 9.76e-11 ***
differentTRUE  0.17518    0.07831   2.237   0.0253 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4044.5  on 2946  degrees of freedom
Residual deviance: 4039.5  on 2945  degrees of freedom
AIC: 4043.5

Number of Fisher Scoring iterations: 4