3-mers CUC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=7.58754e-08

Neutral set average density: 0.012852

Different set average density: 0.0172233

Presence of motif

           motif_present
gene_set    absent present
  different    466     528
  neutral     1150     803

Fisher's exact test: p=7.48901e-10

Binomial GLM: p=6.81651e-10

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.231  -1.029  -1.029   1.333   1.333  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.35916    0.04599   -7.81 5.72e-15 ***
differentTRUE  0.48407    0.07845    6.17 6.82e-10 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4057.8  on 2946  degrees of freedom
Residual deviance: 4019.6  on 2945  degrees of freedom
AIC: 4023.6

Number of Fisher Scoring iterations: 4