3-mers CUG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.357056

Neutral set average density: 0.012597

Different set average density: 0.0128068

Presence of motif

           motif_present
gene_set    absent present
  different      4     990
  neutral       10    1943

Fisher's exact test: p=0.784011

Binomial GLM: p=0.683141

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.3213   0.0898   0.1013   0.1013   0.1013  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.2694     0.3170  16.621   <2e-16 ***
differentTRUE   0.2420     0.5929   0.408    0.683    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 177.72  on 2946  degrees of freedom
Residual deviance: 177.55  on 2945  degrees of freedom
AIC: 181.55

Number of Fisher Scoring iterations: 8