3-mers CUG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.759596

Neutral set average density: 0.00953405

Different set average density: 0.00969819

Presence of motif

           motif_present
gene_set    absent present
  different    605     389
  neutral     1207     746

Fisher's exact test: p=0.63105

Binomial GLM: p=0.621117

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9965  -0.9810  -0.9810   1.3874   1.3874  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.48117    0.04657 -10.332   <2e-16 ***
differentTRUE  0.03952    0.07995   0.494    0.621    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3928.5  on 2946  degrees of freedom
Residual deviance: 3928.2  on 2945  degrees of freedom
AIC: 3932.2

Number of Fisher Scoring iterations: 4