3-mers CUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.868369

Neutral set average density: 0.0199078

Different set average density: 0.0197787

Presence of motif

           motif_present
gene_set    absent present
  different    378     616
  neutral      745    1208

Fisher's exact test: p=0.968011

Binomial GLM: p=0.950161

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.3906  -1.3883   0.9782   0.9802   0.9802  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   0.483337   0.046584  10.376   <2e-16 ***
differentTRUE 0.005016   0.080243   0.063     0.95    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3917.1  on 2946  degrees of freedom
Residual deviance: 3917.1  on 2945  degrees of freedom
AIC: 3921.1

Number of Fisher Scoring iterations: 4