3-mers CUU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=8.86239e-06

Neutral set average density: 0.0158505

Different set average density: 0.0146881

Presence of motif

           motif_present
gene_set    absent present
  different      2     992
  neutral        7    1946

Fisher's exact test: p=0.726542

Binomial GLM: p=0.470768

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.5238   0.0635   0.0847   0.0847   0.0847  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     5.6276     0.3786  14.863   <2e-16 ***
differentTRUE   0.5790     0.8027   0.721    0.471    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 122.22  on 2946  degrees of freedom
Residual deviance: 121.64  on 2945  degrees of freedom
AIC: 125.64

Number of Fisher Scoring iterations: 9