3-mers CUU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00813602

Neutral set average density: 0.0219355

Different set average density: 0.0242254

Presence of motif

           motif_present
gene_set    absent present
  different    311     683
  neutral      666    1287

Fisher's exact test: p=0.125996

Binomial GLM: p=0.125136

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5244  -1.4669   0.8663   0.9133   0.9133  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.65878    0.04773  13.801   <2e-16 ***
differentTRUE  0.12792    0.08341   1.534    0.125    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3744.2  on 2946  degrees of freedom
Residual deviance: 3741.8  on 2945  degrees of freedom
AIC: 3745.8

Number of Fisher Scoring iterations: 4