3-mers GAA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00060739

Neutral set average density: 0.0149411

Different set average density: 0.0126157

Presence of motif

           motif_present
gene_set    absent present
  different    548     446
  neutral      968     985

Fisher's exact test: p=0.00443613

Binomial GLM: p=0.00428545

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.185  -1.185  -1.091   1.170   1.266  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)   
(Intercept)    0.01741    0.04526   0.385  0.70048   
differentTRUE -0.22337    0.07820  -2.856  0.00429 **
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4083.0  on 2946  degrees of freedom
Residual deviance: 4074.8  on 2945  degrees of freedom
AIC: 4078.8

Number of Fisher Scoring iterations: 3