3-mers GAC 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.409769

Neutral set average density: 0.00574501

Different set average density: 0.0061167

Presence of motif

           motif_present
gene_set    absent present
  different    747     247
  neutral     1478     475

Fisher's exact test: p=0.751396

Binomial GLM: p=0.752906

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7559  -0.7559  -0.7466  -0.7466   1.6816  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.13513    0.05274 -21.522   <2e-16 ***
differentTRUE  0.02845    0.09038   0.315    0.753    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3281.6  on 2946  degrees of freedom
Residual deviance: 3281.5  on 2945  degrees of freedom
AIC: 3285.5

Number of Fisher Scoring iterations: 4