3-mers GAC 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.106801

Neutral set average density: 0.0116426

Different set average density: 0.0112455

Presence of motif

           motif_present
gene_set    absent present
  different      9     985
  neutral       23    1930

Fisher's exact test: p=0.576343

Binomial GLM: p=0.501396

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.0674   0.1349   0.1539   0.1539   0.1539  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     4.4298     0.2098  21.119   <2e-16 ***
differentTRUE   0.2656     0.3951   0.672    0.501    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 353.11  on 2946  degrees of freedom
Residual deviance: 352.64  on 2945  degrees of freedom
AIC: 356.64

Number of Fisher Scoring iterations: 7