3-mers GAC 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.686502

Neutral set average density: 0.00413722

Different set average density: 0.00428571

Presence of motif

           motif_present
gene_set    absent present
  different    805     189
  neutral     1600     353

Fisher's exact test: p=0.546344

Binomial GLM: p=0.533789

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6494  -0.6494  -0.6314  -0.6314   1.8497  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.51129    0.05880 -25.701   <2e-16 ***
differentTRUE  0.06220    0.09996   0.622    0.534    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2813.1  on 2946  degrees of freedom
Residual deviance: 2812.7  on 2945  degrees of freedom
AIC: 2816.7

Number of Fisher Scoring iterations: 4