3-mers GAG 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0694153

Neutral set average density: 0.00615463

Different set average density: 0.00531187

Presence of motif

           motif_present
gene_set    absent present
  different    779     215
  neutral     1493     460

Fisher's exact test: p=0.246721

Binomial GLM: p=0.240139

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7329  -0.7329  -0.7329  -0.6982   1.7499  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.17732    0.05333 -22.078   <2e-16 ***
differentTRUE -0.11006    0.09369  -1.175     0.24    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3171.7  on 2946  degrees of freedom
Residual deviance: 3170.3  on 2945  degrees of freedom
AIC: 3174.3

Number of Fisher Scoring iterations: 4