3-mers GAG 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.915877

Neutral set average density: 0.014425

Different set average density: 0.0143924

Presence of motif

           motif_present
gene_set    absent present
  different     11     983
  neutral       17    1936

Fisher's exact test: p=0.549973

Binomial GLM: p=0.533028

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.0802   0.1322   0.1322   0.1492   0.1492  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     4.7352     0.2436  19.439   <2e-16 ***
differentTRUE  -0.2425     0.3889  -0.623    0.533    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 316.49  on 2946  degrees of freedom
Residual deviance: 316.11  on 2945  degrees of freedom
AIC: 320.11

Number of Fisher Scoring iterations: 7