3-mers GAG 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0147074

Neutral set average density: 0.00365591

Different set average density: 0.00275654

Presence of motif

           motif_present
gene_set    absent present
  different    885     109
  neutral     1651     302

Fisher's exact test: p=0.000887968

Binomial GLM: p=0.000910516

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5796  -0.5796  -0.5796  -0.4820   2.1026  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.69871    0.06259 -27.142  < 2e-16 ***
differentTRUE -0.39553    0.11925  -3.317 0.000911 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2381.1  on 2946  degrees of freedom
Residual deviance: 2369.6  on 2945  degrees of freedom
AIC: 2373.6

Number of Fisher Scoring iterations: 4