3-mers GAU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.299606

Neutral set average density: 0.0107629

Different set average density: 0.0113481

Presence of motif

           motif_present
gene_set    absent present
  different    547     447
  neutral     1127     826

Fisher's exact test: p=0.168829

Binomial GLM: p=0.16567

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.093  -1.049  -1.049   1.312   1.312  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.31072    0.04580  -6.784 1.17e-11 ***
differentTRUE  0.10883    0.07851   1.386    0.166    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4030.7  on 2946  degrees of freedom
Residual deviance: 4028.8  on 2945  degrees of freedom
AIC: 4032.8

Number of Fisher Scoring iterations: 4