3-mers GAU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=1.64363e-06

Neutral set average density: 0.0179928

Different set average density: 0.0194748

Presence of motif

           motif_present
gene_set    absent present
  different      1     993
  neutral        4    1949

Fisher's exact test: p=0.668603

Binomial GLM: p=0.524484

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-3.7153   0.0449   0.0640   0.0640   0.0640  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     6.1888     0.5005  12.365   <2e-16 ***
differentTRUE   0.7120     1.1186   0.636    0.524    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 73.783  on 2946  degrees of freedom
Residual deviance: 73.321  on 2945  degrees of freedom
AIC: 77.321

Number of Fisher Scoring iterations: 9