3-mers GAU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00182864

Neutral set average density: 0.0139375

Different set average density: 0.0120322

Presence of motif

           motif_present
gene_set    absent present
  different    535     459
  neutral      969     984

Fisher's exact test: p=0.0320985

Binomial GLM: p=0.030841

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.184  -1.184  -1.113   1.171   1.243  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)  
(Intercept)    0.01536    0.04526   0.339   0.7343  
differentTRUE -0.16858    0.07808  -2.159   0.0308 *
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4084.1  on 2946  degrees of freedom
Residual deviance: 4079.5  on 2945  degrees of freedom
AIC: 4083.5

Number of Fisher Scoring iterations: 3